Blogs – Research Lab of Shen Cheng, Ph.D.

Installing and Using rSharp on MSI

workflow

PBPK

MSI

rSharp is an Open Systems Pharmacology R package used by {ospsuite} for communication with .NET. The {ospsuite} package requires {rSharp} and external dependencies…

Using dos2unix for SLURM Scripts Created on Windows

workflow

MSI

SLURM scripts created or edited on Windows may use Windows line endings. MSI runs Linux, which expects Unix line endings in shell scripts. Before submitting a Windows-edited …

A few basics of visual predictive checks (VPCs)

tool

code

Visual predictive checks (VPCs) are frequently used for model evaluations in pharmacometric analyses. Recently, several engaging discussions on VPC fundamentals emerged…

Finch Studio and MSI

Use Finch Studio on MSI

workflow

MSI

Finch Studio is an innovative modeling workbench to perform pharmacometric analyses. Constructing together with Mohamed Ismail from Enhanced Pharmacodynamics (ePD), this…

Shen Cheng and Mohamed Ismail

PMx workflow at MSI

Create reproducible PMx workflow at MSI

workflow

MSI

Pharmacometric (PMx) research usually involves computationally intensive modeling and simulation processes. High performance computing (HPC) systems provided by Minnesota…

Shen Cheng and Mutaz Jaber

Visual Studio and MSI

Connect MSI with Visual Studio Code over SSH

workflow

MSI

Visual Studio Code (VScode) is a useful source code editor to interact with Minnesota Supercomputing Institute (MSI). This blog illustrate you how to connect VScode with MSI…